docs(standards): vendor template into MCP bundle; add component tools + start_app prompt
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"module": "genericity_matrix",
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"content": {
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"path": "genericity_matrix",
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"docstring": "# Genericity Matrix\n\n## Summary\n\nThis page states precisely what is **reusable as-is**, what is a **template to\nadapt**, and what is **app-specific and must be authored**. Use it to scope a\nnew build.\n\n---\n\n## Reusable as-is (do not rewrite)\n\n| Area | Artifact |\n|---|---|\n| Layering & dependency rule | the package layout and import rules |\n| Composition root | the `init.py` shape, idempotency, `get_svc` overloading |\n| Web edge | `OpenAPIFirstApp` bootstrap, handler-name = `operationId`, thin handlers |\n| CRUD slice | the four-file pattern (model / ports-db / ports-service / converters) |\n| Generic CRUD service | the base service adaptor |\n| Repository factory | base / populating / cached selection |\n| Worker | the poll loop, backoff, retry, status machine |\n| Progress bus | the bus port + in-memory adapter + streaming endpoint |\n| Human-in-the-loop | the durable pause + question document + resolve endpoint + resume map |\n| Infra adaptors | HTTP cache decorator, KV store port, LLM pool scaffold |\n| Testing | integration harness with fakes, fixture-parity pattern |\n| Docs | GSDFC + generated stubs + MCP bundle pipeline |\n\n## Template to adapt (copy, then change names)\n\n| Artifact | Change |\n|---|---|\n| `pyproject.toml` | project name, dependencies |\n| `Dockerfile` / `docker-compose.yaml` | service name, ports, services |\n| `.env.example` | connection strings, provider keys |\n| `openapi.yaml` | every path/schema/operationId |\n| `scripts/` | seed and operator tasks |\n\n## App-specific (must be authored)\n\n| Artifact | Why |\n|---|---|\n| Resource models | the business shape |\n| Repository populate/cache rules | the relationships |\n| Service business logic | domain behaviour |\n| Pipeline families (if any) | the transformation graph |\n| Pattern/rule resources | data-driven policy |\n| Fixtures & golden outputs | test data |\n\n## The two axes\n\nEverything app-specific reduces to **two axes**:\n\n1. **Resource model** — the set of resources, their fields, relationships, and\n the OpenAPI contract.\n2. **Pipeline family** — only if inputs require multi-step transformation.\n\nIf you can specify those two axes, the rest of the app follows mechanically.\n",
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"docstring": "# Genericity Matrix\n\n## Summary\n\nThis page states precisely what is **library-backed**, what is\n**template-provided**, and what is **app-specific and must be authored**. Use it\nto scope a new build and to know, for any given capability, whether to call a\nlibrary, copy template code, or write it yourself.\n\n---\n\n## Tier A — Library-backed (use; never reimplement)\n\nThese capabilities already exist as internal libraries. Reach them through the\nlibrary registry MCP (`find_library(capability)`) and read the library's own MCP\nfor its API. Writing a private copy of any of these is a defect.\n\n| Capability | Library | MCP |\n|---|---|---|\n| Persistence: repositories, cache, populate, transactions | Mongo Ops (`mongo_ops`) | `:8007` |\n| Dependency injection / composition | Hexa (`hexa`) | `:8008` |\n| Deterministic multi-step transformation engine | DAG Pipe (`dagpipe`) | `:8006` |\n| Spec-first HTTP edge, client, codegen | OpenAPI First (`openapi_first`) | `:8004` |\n| Format-agnostic fetch + parse (HTML, PDF, CSV, XLSX) | Omniread (`omniread`) | `:8003` |\n| Read-only email ingestion | Mail Intake (`mail_intake`) | `:8002` |\n| JWT auth primitives (register, login, introspect) | Py JWT (`jwtlib`) | `:8005` |\n| Documentation build (MkDocs + MCP) | Doc Forge (`docforge`) | `:8001` |\n\n## Tier B — Template-provided (copy from `templates/app`, then adapt)\n\nThese are reusable internal components shipped **inside** the template — they are\nnot independent libraries. Copy them as-is, then rename/populate only what is\napp-specific. They give every app the same wiring shape as the reference app.\n\n| Component | Template location | Action |\n|---|---|---|\n| Layering & dependency rule | the package layout + import rules | keep |\n| Composition root shape | `init.py` (`get_svc`/`get_db`, idempotency) | keep |\n| Spec-first web edge | `interfaces/openapi.py`, thin handlers bound to `operationId` | keep |\n| CRUD slice pattern | `domain/<resource>/{models.py, ports/db.py, ports/service.py, converters.py}` | rename + fill |\n| Generic CRUD service | `infra/adapters/service.py` (`CrudsServiceAdaptor`) | keep |\n| Repository factory | `infra/db/repos/mongo.py` (`_repo_factory`) | keep |\n| Worker poll + status loop | `worker.py` | keep |\n| Progress bus + streaming | bus port + in-memory adapter + SSE endpoint | keep |\n| Human-in-the-loop | durable pause + question document + resolve endpoint + resume map | keep |\n| HTTP response cache | `cache_response` decorator + generation invalidation | keep |\n| Key-value store | KV store port + Redis adapter + in-memory fallback | keep |\n| LLM client pool | provider-select + retry pool scaffold | keep |\n| Pipeline scaffold | `pipelines/shared/{ports,loader,registry}.py` + `pipelines/<family>/` | rename + fill |\n| Operator scripts | `scripts/` (`init()` / `get_svc()` / `shutdown()`) | rename |\n| Testing harness | integration fakes + fixture-parity pattern | keep |\n| Project scaffolding | `pyproject.toml`, `Dockerfile`, `docker-compose.yaml`, `.env.example`, `openapi.yaml` | rename + fill |\n\n## Tier C — App-specific (must be authored)\n\n| Artifact | Why |\n|---|---|\n| Resource models | the business shape |\n| Repository populate/cache rules | the relationships |\n| Service business logic | domain behaviour |\n| Pipeline families | the transformation graph |\n| Pattern/rule resources | data-driven policy |\n| Fixtures & golden outputs | test data |\n\n---\n\n## The two axes\n\nEverything app-specific reduces to **two axes**:\n\n1. **Resource model** — the set of resources, their fields, relationships, and\n the OpenAPI contract.\n2. **Pipeline family** — only if inputs require multi-step transformation.\n\nIf you can specify those two axes, the rest of the app follows mechanically:\nTier A is imported, Tier B is copied, and Tier C is the only thing you author.\n",
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"module": "index",
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"content": {
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"path": "index",
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"docstring": "# Standards Reference\n\nThe reference half of the Standards description: the enforceable rules,\npatterns, and the internal library catalog that agents consult while coding.\n\n- **Layering Rules** — the strict request → domain → repository layering and\n the rules that enforce it.\n- **Composition Root** — a single composition point wiring the whole app.\n- **Spec-First Routing** — the OpenAPI contract as the routing source of truth.\n- **CRUD Template** — the standardized generic resource endpoint scaffold.\n- **Pipeline Scaffold** — the deterministic pipeline skeleton for multi-stage\n jobs.\n- **Worker & Progress** — queued work, progress reporting, and visibility.\n- **Human-in-the-Loop** — guardrails and approvals inside automations.\n- **Infra Adapters** — how infrastructure connects without leaking into domain.\n- **Genericity Matrix** — what is generic vs app-specific.\n- **Library Registry** — the catalog of internal libraries behind all of it.\n\nRead the **Wiki** for the philosophy and rationale; these pages are the\nreference that mirrors the `standards` MCP bundle.\n",
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"docstring": "# Standards Reference\n\nThe reference half of the Standards description: the enforceable rules,\npatterns, and the internal library catalog that agents consult while coding.\n\n- **Layering Rules** — the strict request → domain → repository layering and\n the rules that enforce it.\n- **Composition Root** — a single composition point wiring the whole app.\n- **Spec-First Routing** — the OpenAPI contract as the routing source of truth.\n- **CRUD Template** — the standardized generic resource endpoint scaffold.\n- **Pipeline Scaffold** — the deterministic pipeline skeleton for multi-stage\n jobs.\n- **Worker & Progress** — queued work, progress reporting, and visibility.\n- **Human-in-the-Loop** — guardrails and approvals inside automations.\n- **Infra Adapters** — how infrastructure connects without leaking into domain.\n- **Genericity Matrix** — what is library-backed, template-provided, or authored.\n- **Library Registry** — the catalog of internal libraries behind all of it.\n\nRead the **Wiki** for the philosophy and rationale; these pages are the\nreference that mirrors the `standards` MCP bundle.\n",
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"module": "infra_adaptors",
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"content": {
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"path": "infra_adaptors",
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"docstring": "# Infra Adapters\n\n## Summary\n\nAll external systems are reached through adapters in `infra/`. Prefer an\nexisting internal library over writing a new adapter.\n\n---\n\n## Database (MongoDB)\n\n- A single connection manager owns the client lifecycle.\n `setup_database(uri, db_name)` / `shutdown_database()`.\n- A repository **factory** selects the repository flavour:\n\n ```python\n repo_factory(collection, document, engine=None,\n populate_rules=None, cache=None)\n ```\n\n - base repository — plain CRUD;\n - populating repository — resolves referenced documents (foreign keys);\n - cached repository — an LRU/TTL cache in front of reads.\n\n- Referenced documents are described declaratively:\n\n ```python\n PopulateRule(field=\"owner\", collection=\"users\",\n nested_rules=[], max_depth=2, projection=None)\n ```\n\n- Transactions use a session context manager provided by the library.\n\n**Library:** the Mongo operations library (see registry). Do not write raw\nMotor calls in the domain.\n\n## HTTP response cache\n\nA generic GET cache sits behind a decorator.\n\n```python\n@cache_response(ttl=60)\nasync def list_items(request): ...\n```\n\n- Keyed on path + query + user.\n- No-op when no store is wired.\n- `invalidate(*resources)` bumps a generation counter for write-triggered\n invalidation.\n\n## Event / progress bus\n\nA port with an in-memory default adapter (`publish`, `get_events`). Swap for a\ndurable broker in production (see Worker & Progress).\n\n## External clients (ingestion)\n\nExternal fetchers (files, mail, HTTP) are adapters that wrap ingestion\nlibraries. Construct them in the composition root and inject into\norchestrators.\n\n**Libraries:** the ingestion library (formats) and the mail library (email).\n\n## LLM clients\n\nWhen a pipeline calls a model provider, route through a pool adaptor that\nhandles provider selection, retries, and client lifecycle:\n\n```python\npool = setup_async_pool(provider=settings.llm_provider)\nresult = await pool.complete(model=\"...\", messages=[...])\n```\n\nProviders are selected by `LLM_PROVIDER` and configured by environment.\n\n## Key-value store\n\nFor report/snapshot storage, provide a pluggable store port with a Redis\nadapter and an in-memory fallback.\n\n## Rule\n\nIf a capability already exists as a library (DB, DI, ingestion, mail, auth,\ndocs), **use it**. Writing a private copy of a library is a defect.\n",
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"docstring": "# Infra Adapters\n\n## Summary\n\nAll external systems are reached through adapters in `infra/`. Prefer an\nexisting internal library over writing a new adapter; where no library exists,\ncopy the Tier B scaffold from `templates/app`. See the Genericity Matrix for the\nTier A / B / C split.\n\n---\n\n## Database (MongoDB)\n\n- A single connection manager owns the client lifecycle.\n `setup_database(uri, db_name)` / `shutdown_database()`.\n- A repository **factory** selects the repository flavour:\n\n ```python\n repo_factory(collection, document, engine=None,\n populate_rules=None, cache=None)\n ```\n\n - base repository — plain CRUD;\n - populating repository — resolves referenced documents (foreign keys);\n - cached repository — an LRU/TTL cache in front of reads.\n\n- Referenced documents are described declaratively:\n\n ```python\n PopulateRule(field=\"owner\", collection=\"users\",\n nested_rules=[], max_depth=2, projection=None)\n ```\n\n- Transactions use a session context manager provided by the library.\n\n**Tier A — Library (Mongo Ops).** Do not write raw Motor calls in the domain;\nconsult the registry and the library's MCP before touching the driver.\n\n## HTTP response cache\n\n**Tier B — template.** Copy from `templates/app`; not a standalone library.\n\nA generic GET cache sits behind a decorator.\n\n```python\n@cache_response(ttl=60)\nasync def list_items(request): ...\n```\n\n- Keyed on path + query + user.\n- No-op when no store is wired.\n- `invalidate(*resources)` bumps a generation counter for write-triggered\n invalidation.\n\n## Event / progress bus\n\n**Tier B — template.** Copy from `templates/app`.\n\nA port with an in-memory default adapter (`publish`, `get_events`). Swap for a\ndurable broker in production (see Worker & Progress).\n\n## External clients (ingestion)\n\nExternal fetchers (files, mail, HTTP) are adapters that wrap ingestion\nlibraries. Construct them in the composition root and inject into\norchestrators.\n\n**Tier A — Libraries:** Omniread (formats) and Mail Intake (email).\n\n## LLM clients\n\n**Tier B — template.** Copy the pool scaffold from `templates/app`.\n\nWhen a pipeline calls a model provider, route through a pool adaptor that\nhandles provider selection, retries, and client lifecycle:\n\n```python\npool = setup_async_pool(provider=settings.llm_provider)\nresult = await pool.complete(model=\"...\", messages=[...])\n```\n\nProviders are selected by `LLM_PROVIDER` and configured by environment.\n\n## Key-value store\n\n**Tier B — template.** Copy from `templates/app`.\n\nFor report/snapshot storage, provide a pluggable store port with a Redis\nadapter and an in-memory fallback.\n\n## Rule\n\n- **Tier A (libraries: DB, DI, ingestion, mail, auth, docs, pipelines)** — use\n the library; writing a private copy is a defect. Query `find_library` first.\n- **Tier B (cache, progress bus, LLM pool, KV store, composition shape, worker,\n tests)** — these are template code, not libraries: copy them from\n `templates/app` rather than searching the registry.\n- **Tier C (models, business logic, pipeline families, rules)** — author them\n yourself.\n",
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"module": "library_registry",
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"content": {
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"path": "library_registry",
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"docstring": "# Library Registry\n\n## Summary\n\nThe Aetos ecosystem provides internal libraries for the shared concerns of\nevery application. **Use them.** Writing a private copy of any capability below\nis a defect.\n\nEach library also exposes its own documentation as an MCP server. An AI agent\ncan read a library's full API by connecting to its MCP and reading\n`doc://index`, `doc://nav`, and `doc://modules/{module}`.\n\n---\n\n## Catalog\n\n| Library | Import | Purpose | Use instead of | MCP |\n|---|---|---|---|---|\n| DAG Pipe | `dagpipe` | Deterministic state-transformation DAG engine | hand-rolled orchestration/topological ordering | `:8006` |\n| Hexa | `hexa` | Declarative DI / composition-root tooling | manual wiring, hand-written factories | *(see note)* |\n| Mongo Ops | `mongo_ops` | Async MongoDB repositories, cache, populate, transactions | raw Motor CRUD and connection lifecycle | `:8007` |\n| Omniread | `omniread` | Format-agnostic fetch + parse (HTML, PDF, CSV, XLSX) | custom scrapers/parsers | `:8003` |\n| OpenAPI First | `openapi_first` | Spec-first FastAPI bootstrap, client, codegen | decorator routers and hand-written clients | `:8004` |\n| Mail Intake | `mail_intake` | Provider-agnostic read-only email ingestion | Gmail OAuth + MIME parsing | `:8002` |\n| Py JWT | `jwtlib` | JWT auth primitives (register/login/introspect) | password hashing + token code | `:8005` |\n| Doc Forge | `docforge` | Docstring compiler → MkDocs + MCP docs | custom doc generators | `:8001` |\n| Auth Server | *(service)* | Central identity service (register/login/me/introspect) | building auth endpoints yourself | — |\n\n## How to choose\n\n| You need to… | Use |\n|---|---|\n| persist and query documents | Mongo Ops |\n| compose dependencies | Hexa |\n| run a multi-step transformation | DAG Pipe |\n| read/parse an arbitrary input format | Omniread |\n| expose a contract-first HTTP API | OpenAPI First |\n| ingest email | Mail Intake |\n| authenticate users / verify tokens | Py JWT (+ Auth Server) |\n| generate documentation | Doc Forge |\n\n## Discovery\n\nA single **standards MCP** exposes `find_library(capability)`, which returns the\nmatching library, its import name, its \"use instead of\" guidance, and its MCP\nendpoint. Query it before writing any infrastructure.\n\n## Notes\n\n- **Hexa** ships an MCP bundle but is not yet assigned a dedicated port in the\n hub config; it is reachable via the standards registry entry and will be\n wired to a port.\n- Library MCP servers expose **documentation resources** (not executable tools):\n they tell an agent the available API surface so it does not invent code.\n",
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"docstring": "# Library Registry\n\n## Summary\n\nThe Aetos ecosystem provides internal libraries for the shared concerns of\nevery application. **Use them.** Writing a private copy of any capability below\nis a defect.\n\nEach library also exposes its own documentation as an MCP server. An AI agent\ncan read a library's full API by connecting to its MCP and reading\n`doc://index`, `doc://nav`, and `doc://modules/{module}`.\n\n---\n\n## Catalog\n\n| Library | Import | Purpose | Use instead of | MCP |\n|---|---|---|---|---|\n| DAG Pipe | `dagpipe` | Deterministic state-transformation DAG engine | hand-rolled orchestration/topological ordering | `:8006` |\n| Hexa | `hexa` | Declarative DI / composition-root tooling | manual wiring, hand-written factories | `:8008` |\n| Mongo Ops | `mongo_ops` | Async MongoDB repositories, cache, populate, transactions | raw Motor CRUD and connection lifecycle | `:8007` |\n| Omniread | `omniread` | Format-agnostic fetch + parse (HTML, PDF, CSV, XLSX) | custom scrapers/parsers | `:8003` |\n| OpenAPI First | `openapi_first` | Spec-first FastAPI bootstrap, client, codegen | decorator routers and hand-written clients | `:8004` |\n| Mail Intake | `mail_intake` | Provider-agnostic read-only email ingestion | Gmail OAuth + MIME parsing | `:8002` |\n| Py JWT | `jwtlib` | JWT auth primitives (register/login/introspect) | password hashing + token code | `:8005` |\n| Doc Forge | `docforge` | Docstring compiler → MkDocs + MCP docs | custom doc generators | `:8001` |\n| Auth Server | *(service)* | Central identity service (register/login/me/introspect) | building auth endpoints yourself | *(deferred)* |\n\n## How to choose\n\n| You need to… | Use |\n|---|---|\n| persist and query documents | Mongo Ops |\n| compose dependencies | Hexa |\n| run a multi-step transformation | DAG Pipe |\n| read/parse an arbitrary input format | Omniread |\n| expose a contract-first HTTP API | OpenAPI First |\n| ingest email | Mail Intake |\n| authenticate users / verify tokens | Py JWT (+ Auth Server) |\n| generate documentation | Doc Forge |\n\n## Discovery\n\nA single **standards MCP** exposes `find_library(capability)`, which returns the\nmatching library, its import name, its \"use instead of\" guidance, and its MCP\nendpoint. Query it before writing any infrastructure.\n\n## Notes\n\n- **Hexa** is a full library with its own MCP server on `:8008`: read\n `doc://index`, `doc://nav`, and `doc://modules/{module}` (e.g.\n `doc://modules/hexa.container`) to discover the DI surface — `build(cls, *,\n instances, config)` and the `PortNode` model.\n- **Auth Server** is deferred: it has no `pyproject.toml`/importable package and\n no MCP bundle. Do not reach for it yet; `py-jwt` covers token primitives.\n- Library MCP servers expose **documentation resources** (not executable tools):\n they tell an agent the available API surface so it does not invent code.\n",
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