feat(standards): fix F11-F16 and rebuild bundle (43 components) + trial findings

- F11 PopulateRule field_name/collection_name corrections
- F12 service adaptor update handles PopulatingRepository
- F13 nested-references section; F14 authless /users/me guidance
- F15 template ruff-clean; F16 stop vendoring .ruff_cache, ship .gitignore
- document --template-style in build_recipe/spec_first_routing; refresh collected
  openapi-first + standards bundle (12 modules, 43 components)
- add trial.md and trial_findings.md (F1-F16, re-trial A/B evidence)

standards/src/templates/app/.gitignore

@@ -0,0 +1,23 @@
+# Byte-compiled / caches
+__pycache__/
+*.py[cod]
+.ruff_cache/
+.pytest_cache/
+.mypy_cache/
+
+# Virtual environments
+.venv/
+venv/
+
+# Env
+.env
+
+# Generated wire contract (regenerate from openapi.yaml)
+_gen/
+
+# Packaging / coverage
+dist/
+build/
+*.egg-info/
+htmlcov/
+.coverage

standards/src/templates/app/domain/item/ports/db.py

@@ -2,9 +2,10 @@
 
 Mongo persistence for items: document schema and repository factory.
 """
+from mongo_ops import BaseDocument, BaseRepository
+
 from domain.item.models import Item
 from infra.db.repos.mongo import _repo_factory as mongo_repo_factory
-from mongo_ops import BaseDocument, BaseRepository
 
 
 class ItemDocument(Item, BaseDocument):

standards/src/templates/app/domain/job/models.py

@@ -3,6 +3,7 @@
 Job domain model — a pipeline work item consumed by the background worker.
 """
 from typing import Literal
+
 from pydantic import BaseModel, Field
 
 

standards/src/templates/app/domain/job/ports/db.py

@@ -2,9 +2,10 @@
 
 Mongo persistence for jobs: document schema and repository factory.
 """
+from mongo_ops import BaseDocument, BaseRepository
+
 from domain.job.models import Job
 from infra.db.repos.mongo import _repo_factory as mongo_repo_factory
-from mongo_ops import BaseDocument, BaseRepository
 
 
 class JobDocument(Job, BaseDocument):

standards/src/templates/app/infra/adapters/kv.py

@@ -21,18 +21,17 @@ Example:
 from __future__ import annotations
 
 from abc import ABC, abstractmethod
-from typing import Dict, List, Optional
 
 
 class KVStore(ABC):
     """Abstract key-value store port."""
 
     @abstractmethod
-    async def get(self, key: str) -> Optional[str]:
+    async def get(self, key: str) -> str | None:
         """Return the value at ``key``, or ``None``."""
 
     @abstractmethod
-    async def set(self, key: str, value: str, ttl: Optional[int] = None) -> None:
+    async def set(self, key: str, value: str, ttl: int | None = None) -> None:
         """Store ``value`` at ``key`` with an optional TTL in seconds."""
 
     @abstractmethod
@@ -40,7 +39,7 @@ class KVStore(ABC):
         """Delete ``key`` if present."""
 
     @abstractmethod
-    async def scan(self, pattern: str) -> List[str]:
+    async def scan(self, pattern: str) -> list[str]:
         """Return keys matching a glob ``pattern``."""
 
     async def clear(self, pattern: str = "*") -> None:
@@ -67,8 +66,8 @@ class InMemoryKV(KVStore):
 
     def __init__(self) -> None:
         """Initialize an empty store with no imports or connections."""
-        self._data: Dict[str, str] = {}
-        self._expiry: Dict[str, float] = {}
+        self._data: dict[str, str] = {}
+        self._expiry: dict[str, float] = {}
 
     def _expired(self, key: str) -> bool:
         import time
@@ -80,13 +79,13 @@ class InMemoryKV(KVStore):
             return True
         return False
 
-    async def get(self, key: str) -> Optional[str]:
+    async def get(self, key: str) -> str | None:
         """Return the value at ``key``, or ``None`` when absent/expired."""
         if self._expired(key):
             return None
         return self._data.get(key)
 
-    async def set(self, key: str, value: str, ttl: Optional[int] = None) -> None:
+    async def set(self, key: str, value: str, ttl: int | None = None) -> None:
         """Store ``value`` at ``key`` with an optional TTL in seconds."""
         import time
 
@@ -98,7 +97,7 @@ class InMemoryKV(KVStore):
         self._data.pop(key, None)
         self._expiry.pop(key, None)
 
-    async def scan(self, pattern: str) -> List[str]:
+    async def scan(self, pattern: str) -> list[str]:
         """Return live keys matching a glob ``pattern``."""
         import fnmatch
 
@@ -126,11 +125,11 @@ class RedisKV(KVStore):
 
         self._redis = Redis.from_url(url, decode_responses=decode_responses)
 
-    async def get(self, key: str) -> Optional[str]:
+    async def get(self, key: str) -> str | None:
         """Return the value at ``key``, or ``None``."""
         return await self._redis.get(key)
 
-    async def set(self, key: str, value: str, ttl: Optional[int] = None) -> None:
+    async def set(self, key: str, value: str, ttl: int | None = None) -> None:
         """Store ``value`` at ``key`` with an optional TTL in seconds."""
         await self._redis.set(key, value, ex=ttl)
 
@@ -138,7 +137,7 @@ class RedisKV(KVStore):
         """Delete ``key`` if present."""
         await self._redis.delete(key)
 
-    async def scan(self, pattern: str) -> List[str]:
+    async def scan(self, pattern: str) -> list[str]:
         """Return keys matching a glob ``pattern``."""
         return [key async for key in self._redis.scan_iter(match=pattern)]
 

standards/src/templates/app/infra/adapters/service.py

@@ -5,14 +5,14 @@ Generic CRUD service adaptor over a Mongo repository.
 Bridge pydantic models and mongo-ops documents, exposing create, read, update,
 patch, delete, and search operations for every domain that needs them.
 """
-from typing import Generic, Type, TypeVar
+from typing import Generic, TypeVar
+
+from mongo_ops import BaseDocument, PopulatingRepository
+from mongo_ops.models import PyObjectId
+from pydantic import BaseModel
 
 from infra.db.repos import mongo
 
-from pydantic import BaseModel
-from mongo_ops import BaseDocument
-from mongo_ops.models import PyObjectId
-
 Model = TypeVar("Model", bound=BaseModel)
 Schema = TypeVar("Schema", bound=BaseDocument)
 
@@ -27,8 +27,8 @@ class CrudsServiceAdaptor(Generic[Model, Schema]):
     """
 
     repo: mongo.BaseRepository
-    model: Type[Model]
-    schema: Type[Schema]
+    model: type[Model]
+    schema: type[Schema]
 
     def __init__(self, *, repo=None):
         """Initialize the adaptor with a backing repository.
@@ -83,7 +83,17 @@ class CrudsServiceAdaptor(Generic[Model, Schema]):
 
         Returns:
             Schema | None: Updated document, or ``None`` when absent.
+
+        Notes:
+            A populating repository expects a document *model* (so FK fields can
+            be depopulated), while a base repository expects a raw mapping. This
+            method normalizes both inputs to whatever the repo requires.
         """
+        if isinstance(self.repo, PopulatingRepository):
+            if not isinstance(data, self.schema):
+                fields = data if isinstance(data, dict) else self.model_to_dict(data)
+                data = self.schema(**fields)
+            return await self.repo.update(id, data)
         return await self.repo.update(
             id,
             data if isinstance(data, dict) else self.model_to_dict(data),

standards/src/templates/app/infra/adapters/sse.py

@@ -7,7 +7,7 @@ SSEInMemoryBus — in-memory event bus for SSE progress events.
 Buffer published progress events so they can be replayed (and streamed) per
 correlation key, such as a job, upload, or fetch-request id.
 """
-from typing import Generic, List, TypeVar
+from typing import Generic, TypeVar
 
 T = TypeVar("T")
 
@@ -27,7 +27,7 @@ class SSEInMemoryBus(Generic[T]):
             key_attr (str): Attribute name on each event holding the stream
                 correlation key (for example ``"job_id"``).
         """
-        self._events: List[T] = []
+        self._events: list[T] = []
         self._key_attr = key_attr
 
     async def publish(self, event: T) -> None:
@@ -38,7 +38,7 @@ class SSEInMemoryBus(Generic[T]):
         """
         self._events.append(event)
 
-    def get_events(self, key: str) -> List[T]:
+    def get_events(self, key: str) -> list[T]:
         """Return buffered events for a correlation key.
 
         Args:

standards/src/templates/app/infra/db/repos/mongo.py

@@ -5,21 +5,20 @@ Generic MongoDB CRUD repo — single implementation for all domains.
 Select a concrete mongo-ops repository (base, cached, or populating) from the
 options supplied to the factory.
 """
-from typing import List, Optional, Type
 
 from mongo_ops import BaseRepository, CachedBaseRepository, PopulatingRepository
 from mongo_ops.cache import CacheBackend, CacheConfig
 from mongo_ops.models import BaseDocument
-from mongo_ops.populate import PopulationEngine, PopulateRule
+from mongo_ops.populate import PopulateRule, PopulationEngine
 
 
 def _repo_factory(
     collection: str,
-    db_model: Type[BaseDocument],
-    cache_backend: Optional[CacheBackend] = None,
-    cache_config: Optional[CacheConfig] = None,
-    engine: Optional[PopulationEngine] = None,
-    populate_rules: Optional[List[PopulateRule]] = None,
+    db_model: type[BaseDocument],
+    cache_backend: CacheBackend | None = None,
+    cache_config: CacheConfig | None = None,
+    engine: PopulationEngine | None = None,
+    populate_rules: list[PopulateRule] | None = None,
 ) -> BaseRepository:
     """Build the appropriate mongo-ops repository.
 

standards/src/templates/app/infra/http_cache.py

@@ -23,8 +23,9 @@ Notes:
 """
 import hashlib
 import json
+from collections.abc import Callable
 from functools import wraps
-from typing import Any, Callable, Optional
+from typing import Any
 
 from fastapi import Request, Response
 from fastapi.encoders import jsonable_encoder
@@ -55,7 +56,7 @@ class HttpCacheStore:
 
         self._redis = Redis.from_url(url, decode_responses=decode_responses)
 
-    async def get(self, key: str) -> Optional[str]:
+    async def get(self, key: str) -> str | None:
         """Read the value stored at ``key``.
 
         Args:
@@ -173,7 +174,7 @@ def _cache_key(request: Request, generation: str = "0") -> str:
     return hashlib.sha256("|".join(parts).encode()).hexdigest()
 
 
-def cache_response(ttl: Optional[int] = None) -> Callable:
+def cache_response(ttl: int | None = None) -> Callable:
     """Decorate a GET-style route handler to cache its JSON response.
 
     Args:
@@ -203,7 +204,7 @@ def cache_response(ttl: Optional[int] = None) -> Callable:
                 return await func(*args, **kwargs)
 
             db_resources = getattr(request.app.state, "db_resources", None) or {}
-            store: Optional[HttpCacheStore] = db_resources.get("http_cache_store")
+            store: HttpCacheStore | None = db_resources.get("http_cache_store")
             if store is None:
                 return await func(*args, **kwargs)
 

standards/src/templates/app/init.py

@@ -4,7 +4,7 @@ Infrastructure initialization — connects MongoDB and wires all repos and servi
 Shared bootstrap for both the FastAPI app and the worker, guarded against
 repeated initialization via a module-level flag.
 """
-from typing import Any, Dict
+from typing import Any
 
 from config import settings
 from domain.item.ports.db import create_item_repo
@@ -13,11 +13,11 @@ from domain.job.ports.db import create_job_repo
 from domain.job.ports.service import get_job_service
 from infra.db.setup import setup_database, shutdown_database
 
-_resources: Dict[str, Any] = {}
+_resources: dict[str, Any] = {}
 _initialized: bool = False
 
 
-async def init() -> Dict[str, Any]:
+async def init() -> dict[str, Any]:
     """Connect MongoDB, wire all repos and services, and return the resources dict.
 
     Idempotent: repeated calls short-circuit and return the cached resources.

standards/src/templates/app/interfaces/openapi.py

@@ -4,5 +4,6 @@ All handler functions — names must match openapi.yaml operationId values. The
 OpenAPI-first router resolves each operation to a handler by name, so this module
 re-exports every route handler from the subpackages into one flat namespace.
 """
+# ruff: noqa: F403
 from interfaces.item.routes import *
 from interfaces.job.routes import *

standards/src/templates/app/main.py

@@ -4,6 +4,7 @@ FastAPI application bootstrap — uses OpenAPIFirstApp for spec-driven routing.
 Handlers are looked up by operationId in interfaces.openapi, so no router tables
 are declared here; the lifespan initializes and shuts down app resources.
 """
+# ruff: noqa: E402
 import logging
 from contextlib import asynccontextmanager
 

standards/src/templates/app/pipelines/shared/loader.py

@@ -9,7 +9,6 @@ from pathlib import Path
 from typing import Any
 
 import yaml
-
 from hexa import build
 
 

standards/src/templates/app/pipelines/shared/registry.py

@@ -4,13 +4,12 @@ Family registry — resolve a ``(kind, variant, mode)`` triple to a root class.
 
 A single lookup replaces hand-rolled ``if/else`` family selection.
 """
-from typing import Dict, Type
 
 # Populated by ``register`` as families import.
-_FAMILIES: Dict[str, Dict[str, Dict[str, Type]]] = {}
+_FAMILIES: dict[str, dict[str, dict[str, type]]] = {}
 
 
-def register(kind: str, variant: str, root_cls: Type, mode: str = "default") -> Type:
+def register(kind: str, variant: str, root_cls: type, mode: str = "default") -> type:
     """Register ``root_cls`` for a ``(kind, variant, mode)`` triple.
 
     Returns:
@@ -20,7 +19,7 @@ def register(kind: str, variant: str, root_cls: Type, mode: str = "default") ->
     return root_cls
 
 
-def resolve_root(kind: str, variant: str, mode: str = "default") -> Type:
+def resolve_root(kind: str, variant: str, mode: str = "default") -> type:
     """Return the root class for a ``(kind, variant, mode)`` triple.
 
     Raises:

standards/src/templates/app/pyproject.toml

@@ -40,6 +40,7 @@ testpaths = ["tests"]
 [tool.ruff]
 line-length = 100
 target-version = "py311"
+extend-exclude = ["_gen"]
 
 [tool.ruff.lint]
 select = ["E", "F", "I", "UP"]

standards/src/templates/app/tests/integration/test_item_routes.py

@@ -1,9 +1,9 @@
 import importlib
 
-import interfaces.openapi as routes_module
-
 from openapi_first.app import OpenAPIFirstApp
 
+import interfaces.openapi as routes_module
+
 
 def test_openapi_app_builds():
     """The spec-first app must build and plant each route handler."""

standards/src/templates/app/tests/integration/test_openapi_app_builds.py

@@ -1,11 +1,10 @@
 import importlib
 
 import yaml
+from openapi_first.app import OpenAPIFirstApp
 
 import interfaces.openapi as routes_module
 
-from openapi_first.app import OpenAPIFirstApp
-
 _HTTP_METHODS = {"get", "post", "put", "patch", "delete", "head", "options"}